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SAL
SAL is a simple implementation of Gerstein/Levitt algorithm (iterated dynamic programming)
for aligning protein structures. I have developed this program in Winter 2000, and
implemented it in my visualization software Biodesigner and iMol, as well as a standalone tool.
The extensions to the original algorithm include careful pre-orientation of
initial structures and variable alignment gap parameters.
If you are using this program in your work, please cite:
Piotr Rotkiewicz, "Protein structure modeling using sequence similarities and structure analogies," PhD Thesis, Warsaw University, 2002.
Download SAL version 2.2, updated on January 1, 2006:
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[an error occurred while processing this directive] visitors since Dec 1, 2006
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Copyright © 2000-2007 Piotr Rotkiewicz
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