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PULCHRA
PULCHRA is a simple command-line tool for all-atom reconstruction
and refinement of reduced protein models. PUCLHRA can correct alpha
carbon positions, add backbone and side chain atoms, improve hydrogen
bonds patterns and check proper protein chirality.
PULCHRA is distributed under terms of a very liberal MIT license:
LICENSE
PULCHRA PowerfUL CHain Restoration Algorithm
Version 3.06
Copyright © 2000-2009 Piotr Rotkiewicz
Permission is hereby granted, free of charge, to any person
obtaining a copy of this software and associated documentation
files (the "Software"), to deal in the Software without
restriction, including without limitation the rights to use,
copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the
Software is furnished to do so, subject to the following
conditions:
The above copyright notice and this permission notice shall be
included in all copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
OTHER DEALINGS IN THE SOFTWARE.
If you are using PULCHRA in your research, please cite the program as follows:
Rotkiewicz P., Skolnick, J., "Fast method for reconstruction of full-atom protein models
from reduced representations,"
J. Comp. Chem., Jul 15, 29(9), 1460-5 (2008).
Download PULCHRA version 3.06, updated on January 6, 2009:
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[an error occurred while processing this directive] visitors since Dec 1, 2006
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Copyright © 1999-2006 Piotr Rotkiewicz
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