•  2009

20. Sicinska, W., Rotkiewicz P., "Structural changes of vitamin D receptor induced by 20-epi-1,25-(OH)2 D3: An insight from a computational analysis.", J. Steroid Biochemistry and Molecular Biology, [article in press] (2009)

•  2008

19. Rotkiewicz P., Skolnick, J., "Fast method for reconstruction of full-atom protein models from reduced representations.", J. Comp. Chem., Jul 15, 29(9), 1460-5 (2008)  •  PubMed

•  2007

18. Sicinska W., Rotkiewicz P., "Computational analysis of the active sites in binary and ternary complexes of the vitamin D receptor.", J. Steroid Biochemistry and Molecular Biology, 103(3-5), 305-309 (2007)  •  PubMed

•  2005

17. Bolesta E, Kowalczyk A, Wierzbicki A, Rotkiewicz P, Bambach B, Tsao CY, Horwacik I, Kolinski A, Rokita H, Brecher M, Wang X, Ferrone S, Kozbor D., "DNA vaccine expressing the mimotope of GD2 ganglioside induces protective GD2 cross-reactive antibody responses.", Cancer Research, 65(8), 3410-8 (2005)  •  PubMed

•  2004

16. W. Sicinska, P. Rotkiewicz, H. DeLuca, "Model of three-dimensional structure of VDR bound with vitamin D3 analogs substituted at carbon-2", J. Steroid Biochemistry and Molecular Biology, 89, 107-110 (2004)  •  PubMed

•  2003

15. M. Boniecki, P. Rotkiewicz, J. Skolnick, A. Kolinski, "Protein fragment reconstruction using various modeling techniques", J. Comp. Aid. Mol. Design 17(11), 725-738 (2003)  •  PubMed

•  2002

14. R.R.Sicinski, P.Rotkiewicz, A.Kolinski, W.Sicinska, J.M.Prahl, C.M.Smith, H.F.DeLuca, "2-ethyl and 2-ethylidene analogs of 1-alpha,25-dihydroxy-19-norvitamin D3: synthesis, conformational analysis, biological activities, and docking to the modeled rVDR Ligand binding Domain", J.Med.Chem., 45(16), 3366-3380 (2002)  •  PubMed

•  2001

13. J.Skolnick, A.Kolinski, D.Kihara, M.Betancourt, P.Rotkiewicz, M.Boniecki, "Ab initio protein structure prediction via a combination of threading, lattice folding, clustering and structure refinement", Proteins Suppl. 5 (CASP4 Proceedings), 149-156 (2001)  •  PubMed

12. J.M.Bujnicki, P.Rotkiewicz, A.Kolinski, L.Rychlewski, "Three-dimensional modeling of the I-TevI homing endonuclease catalytic domain, a GIy-YIG superfamily member, using NMR restraints and Monte Carlo dynamics", Protein Eng., 14, 717-721 (2001)  •  PubMed

11. J.Skolnick, A.Kolinski, P.Rotkiewicz, B.Ilkowski, "Prediciton of protein structure and function on a genomic scale", Abstr. Pap. Am. Chem. Soc., 221, 58 (2001)

10. A.Kolinski, M.Betancourt, D.Kihara, P.Rotkiewicz, J.Skolnick, "Generalized Comparative Modeling (GENECOMP): a combination of sequence comparison, threading, lattice and off-lattice modeling for protein structure prediction and refinement", Proteins, 44, 133-149 (2001)  •  PubMed

9. P.Rotkiewicz, W.Sicinska, A.Kolinski, H.F.DeLuca, "Model of three-dimensional structure of vitamin D receptor and its binding mechanism with 1-alpha,25-dihydroxyvitamin D3", Proteins, 44, 188-199 (2001)  •  PubMed

8. A.Kolinski, P.Rotkiewicz, J.Skolnick, "Structure of Proteins: New Approach to Molecular Modeling", Polish J. Chem., 75, 587-599 (2001)

•  2000

7. M.Feig, P.Rotkiewicz, A.Kolinski, J.Skolnick, C.Brooks, "Accurate reconstruction of all-atom protein representations from side chain based low resolution models", Proteins, 41 (1), 86-97 (2000)  •  PubMed

6. A.Kolinski, P.Rotkiewicz, B.Ilkowski, J.Skolnick, "Protein Folding: Flexible Lattice Models", Progress of Theoretical Physics Suppl., 138, 292-300 (2000)

•  1999

5. M.Trojanowicz, A.Jagielska, P.Rotkiewicz, A.Kierzek, "Flow-injection determination of phenols with thyrosinase amperometric biosensor and data processing by neural network", Chem. Anal. Warsaw, 44 (5), 865-878 (1999)

4. A.Kolinski, P.Rotkiewicz, B.Ilkowski, J.Skolnick, "A method for the improvement of threading-based proteins models", Proteins 37, 502-610 (1999)  •  PubMed

3. A.R.Ortiz, A.Kolinski, P.Rotkiewicz, B.Ilkowski, J. Skolnick, "Ab initio folding of proteins using restraints derived from evolutionary information", Proteins Suppl. 3 (CASP3 Proceedings) , 177-185 (1999)  •  PubMed

•  1998

2. A.Kolinski, P.Rotkiewicz, J.Skolnick, "Application of a high coordination lattice model in protein strcuture prediction", in "Proceedings of Workshop on Monte Carlo Approach to Biopolymers and Protein Folding", P.Grassberger, G.T.Barkema and W.Nadler, Eds., World Scientific Publishing Co., Singapore, 100-130 (1998)

1. A.Kolinski, L.Jaroszewski, P.Rotkiewicz, J.Skolnick, "An efficient Monte Carlo model of proeitn chains. Modeling the short-range correlations between side group centers", J.Phys.Chem., 102 (23), 4628-4637 (1998)